Added step to add bioconda as channel for dependencies
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5
Jenkinsfile
vendored
5
Jenkinsfile
vendored
@ -21,6 +21,7 @@ pipeline {
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}
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stage("conda") {
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steps {
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sh 'conda config --add channels bioconda'
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sh 'conda env update -n base --file environment.yml'
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}
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}
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@ -36,18 +37,14 @@ pipeline {
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}
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stage("lint") {
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steps {
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container(miniforge3) {
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dir('auto-updated-bioconda-recipes') {
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sh 'conda -n install python=3.10 bioconda-utils'
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sh 'bioconda-utils lint recipes/ --packages autobigs-cli'
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}
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}
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}
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}
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stage("build") {
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steps {
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dir('auto-updated-bioconda-recipes') {
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sh 'conda install autobigs-engine=$(python ../pypi_latest_ver.py autoBIGS.engine)'
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sh 'conda build recipes/autobigs-cli'
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}
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}
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1
auto-updated-bioconda-recipes
Submodule
1
auto-updated-bioconda-recipes
Submodule
@ -0,0 +1 @@
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Subproject commit 5b96026a21dcf8aaeb86115c2422633b099856c4
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@ -6,3 +6,5 @@ dependencies:
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- conda-build
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- grayskull
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- git
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- bioconda-utils
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- python=3.10.*
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