From a6d7c71f69ac1955e8f186fa7a80230b5124393e Mon Sep 17 00:00:00 2001
From: Harrison Deng <yunyangdeng@outlook.com>
Date: Wed, 26 Feb 2025 17:49:37 +0000
Subject: [PATCH] Removed unecessary nesting in pipeline

---
 Jenkinsfile | 34 +++++++++++++++-------------------
 1 file changed, 15 insertions(+), 19 deletions(-)

diff --git a/Jenkinsfile b/Jenkinsfile
index 5b2954f..e9fcb05 100644
--- a/Jenkinsfile
+++ b/Jenkinsfile
@@ -45,26 +45,22 @@ pipeline {
                 sh 'conda build auto-updated-bioconda-recipes/recipes/autobigs-cli --output-folder ./conda-bld'
             }
         }
-        stage("publish to bioconda") {
-            stages {
-                stage('lint') {
-                    steps {
-                        dir('auto-updated-bioconda-recipes') {
-                            sh 'bioconda-utils lint recipes/ --packages autobigs-cli'
-                        }
-                    }
+        stage('lint') {
+            steps {
+                dir('auto-updated-bioconda-recipes') {
+                    sh 'bioconda-utils lint recipes/ --packages autobigs-cli'
                 }
-                stage('commit') {
-                    environment {
-                        TOKEN = credentials('github.com')
-                    }
-                    steps {
-                        dir('auto-updated-bioconda-recipes') {
-                            sh 'git commit -a -m "Automatically updated autobigs-cli bioconda recipe to ${TOOL_VER}."'
-                            sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-cli-${TOOL_VER}'
-                            sh 'git request-pull update-autobigs-cli-${TOOL_VER} https://github.com/bioconda/bioconda-recipes.git master'
-                        }
-                    }
+            }
+        }
+        stage('pull-request') {
+            environment {
+                TOKEN = credentials('github.com')
+            }
+            steps {
+                dir('auto-updated-bioconda-recipes') {
+                    sh 'git commit -a -m "Automatically updated autobigs-cli bioconda recipe to ${TOOL_VER}."'
+                    sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-cli-${TOOL_VER}'
+                    sh 'git request-pull update-autobigs-cli-${TOOL_VER} https://github.com/bioconda/bioconda-recipes.git master'
                 }
             }
         }