Initial commit, copied from autoBIGS.engine-bioconda

2025-02-17 19:32:25 +00:00
commit 941ecb1b13
10 changed files with 281 additions and 0 deletions
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+pipeline {
+    agent {
+        kubernetes {
+            cloud 'rsys-devel'
+            defaultContainer 'miniforge3'
+            inheritFrom 'miniforge'
+        }
+    }
+    stages {
+        stage("prepare") {
+            parallel {
+                stage("recipes repo") {
+                    steps {
+                        sh 'git clone https://github.com/Syph-and-VPD-Lab/bioconda-recipes.git'
+                        dir('bioconda-recipes') {
+                            sh 'git pull'
+                            sh 'git pull origin update-autobigs-cli'
+                            sh 'git checkout update-autobigs-cli'
+                        }
+                    }
+                }
+                stage("conda") {
+                    steps {
+                        sh 'conda env update -n base --file environment.yml'
+                    }
+                }
+            }
+        }
+        stage("generate recipe") {
+            steps {
+                sh 'grayskull pypi autobigs.cli --maintainers "Harrison Deng"'
+                sh 'python scripts/adapt_names.py autobigs.cli'
+            }
+        }
+        stage("build") {
+            steps {
+                sh 'conda build autobigs-cli'
+            }
+        }
+        stage("commit") {
+            environment {
+                TOKEN = credentials('github.com')
+            }
+            steps {
+                dir('bioconda-recipes') {
+                    sh 'cp -r ../autobigs-cli/* recipes/autobigs-cli/.'
+                    sh 'git commit -a -m "Automatically updated autobigs-cli bioconda recipe to $(python ../scripts/package_latest_version.py autoBIGS.cli)."'
+                    sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/bioconda-recipes.git update-autobigs-cli'
+                }
+            }
+        }
+    }
+}