ydeng/autoBIGS.cli-bioconda
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Removed submodule configuration and automated pull requests
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Harrison Deng 2025-02-26 17:46:22 +00:00
parent c0a5c34380
commit 0bc1cb1c51
3 changed files with 3 additions and 7 deletions
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3
.gitmodules vendored
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@ -1,3 +0,0 @@
[submodule "auto-updated-bioconda-recipes"]
path = auto-updated-bioconda-recipes
url = https://github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git

6
Jenkinsfile vendored
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@ -19,8 +19,7 @@ pipeline {
steps {
sh 'git config --global --add safe.directory /home/jenkins/agent/workspace/autoBIGS.cli-bioconda_main'
sh 'git config --global --add safe.directory /home/jenkins/agent/workspace/autoBIGS.cli-bioconda_main/auto-updated-bioconda-recipes'
sh 'git submodule init'
sh 'git submodule update'
sh 'git clone https://github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git'
dir('auto-updated-bioconda-recipes') {
sh 'git checkout -b update-autobigs-cli-${TOOL_VER}'
}
@ -62,7 +61,8 @@ pipeline {
steps {
dir('auto-updated-bioconda-recipes') {
sh 'git commit -a -m "Automatically updated autobigs-cli bioconda recipe to ${TOOL_VER}."'
sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-cli'
sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/auto-updated-bioconda-recipes.git update-autobigs-cli-${TOOL_VER}'
sh 'git request-pull update-autobigs-cli-${TOOL_VER} https://github.com/bioconda/bioconda-recipes.git master'
}
}
}

1
auto-updated-bioconda-recipes

@ -1 +0,0 @@
Subproject commit d3a720566fbbc63e32571ade8d643a6f6b1a4e25