53 lines
1.8 KiB
Plaintext
53 lines
1.8 KiB
Plaintext
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pipeline {
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agent {
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kubernetes {
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cloud 'rsys-devel'
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defaultContainer 'miniforge3'
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inheritFrom 'miniforge'
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}
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}
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stages {
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stage("prepare") {
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parallel {
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stage("recipes repo") {
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steps {
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sh 'git clone https://github.com/Syph-and-VPD-Lab/bioconda-recipes.git'
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dir('bioconda-recipes') {
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sh 'git pull'
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sh 'git pull origin update-autobigs-cli'
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sh 'git checkout update-autobigs-cli'
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}
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}
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}
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stage("conda") {
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steps {
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sh 'conda env update -n base --file environment.yml'
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}
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}
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}
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}
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stage("generate recipe") {
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steps {
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sh 'grayskull pypi autobigs.cli --maintainers "Harrison Deng"'
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sh 'python scripts/adapt_names.py autobigs.cli'
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}
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}
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stage("build") {
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steps {
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sh 'conda build autobigs-cli'
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}
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}
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stage("commit") {
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environment {
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TOKEN = credentials('github.com')
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}
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steps {
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dir('bioconda-recipes') {
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sh 'cp -r ../autobigs-cli/* recipes/autobigs-cli/.'
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sh 'git commit -a -m "Automatically updated autobigs-cli bioconda recipe to $(python ../scripts/package_latest_version.py autoBIGS.cli)."'
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sh 'git push https://${TOKEN}@github.com/Syph-and-VPD-Lab/bioconda-recipes.git update-autobigs-cli'
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}
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}
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}
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}
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}
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